.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/data/plot_scientific.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_data_plot_scientific.py>`
        to download the full example code or to run this example in your browser via Binder

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_data_plot_scientific.py:


=================
Scientific images
=================

The title of each image indicates the name of the function.

.. GENERATED FROM PYTHON SOURCE LINES 9-45

.. code-block:: Python


    import matplotlib.pyplot as plt
    import matplotlib
    import numpy as np

    from skimage import data

    matplotlib.rcParams['font.size'] = 18

    images = (
        'hubble_deep_field',
        'immunohistochemistry',
        'lily',
        'microaneurysms',
        'moon',
        'retina',
        'shepp_logan_phantom',
        'skin',
        'cell',
        'human_mitosis',
    )


    for name in images:
        caller = getattr(data, name)
        image = caller()
        plt.figure()
        plt.title(name)
        if image.ndim == 2:
            plt.imshow(image, cmap=plt.cm.gray)
        else:
            plt.imshow(image)

    plt.show()





.. rst-class:: sphx-glr-horizontal


    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_001.png
         :alt: hubble_deep_field
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_001.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_002.png
         :alt: immunohistochemistry
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_002.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_003.png
         :alt: lily
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_003.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_004.png
         :alt: microaneurysms
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_004.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_005.png
         :alt: moon
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_005.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_006.png
         :alt: retina
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_006.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_007.png
         :alt: shepp_logan_phantom
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_007.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_008.png
         :alt: skin
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_008.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_009.png
         :alt: cell
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_009.png
         :class: sphx-glr-multi-img

    *

      .. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_010.png
         :alt: human_mitosis
         :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_010.png
         :class: sphx-glr-multi-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers).




.. GENERATED FROM PYTHON SOURCE LINES 46-47

Thumbnail image for the gallery

.. GENERATED FROM PYTHON SOURCE LINES 47-65

.. code-block:: Python



    fig, axs = plt.subplots(nrows=3, ncols=3)
    for ax in axs.flat:
        ax.axis("off")
    axs[0, 0].imshow(data.hubble_deep_field())
    axs[0, 1].imshow(data.immunohistochemistry())
    axs[0, 2].imshow(data.lily())
    axs[1, 0].imshow(data.microaneurysms())
    axs[1, 1].imshow(data.moon(), cmap=plt.cm.gray)
    axs[1, 2].imshow(data.retina())
    axs[2, 0].imshow(data.shepp_logan_phantom(), cmap=plt.cm.gray)
    axs[2, 1].imshow(data.skin())
    further_img = np.full((300, 300), 255)
    for xpos in [100, 150, 200]:
        further_img[150 - 10 : 150 + 10, xpos - 10 : xpos + 10] = 0
    axs[2, 2].imshow(further_img, cmap=plt.cm.gray)
    plt.subplots_adjust(wspace=-0.3, hspace=0.1)



.. image-sg:: /auto_examples/data/images/sphx_glr_plot_scientific_011.png
   :alt: plot scientific
   :srcset: /auto_examples/data/images/sphx_glr_plot_scientific_011.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers).





.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 3.821 seconds)


.. _sphx_glr_download_auto_examples_data_plot_scientific.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: binder-badge

      .. image:: images/binder_badge_logo.svg
        :target: https://mybinder.org/v2/gh/scikit-image/scikit-image/v0.23.2?filepath=notebooks/auto_examples/data/plot_scientific.ipynb
        :alt: Launch binder
        :width: 150 px

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_scientific.ipynb <plot_scientific.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_scientific.py <plot_scientific.py>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_