transform
¶skimage.transform.downscale_local_mean (...) 
Downsample Ndimensional image by local averaging. 
skimage.transform.estimate_transform (ttype, ...) 
Estimate 2D geometric transformation parameters. 
skimage.transform.frt2 (a) 
Compute the 2dimensional finite radon transform (FRT) for an n x n integer array. 
skimage.transform.hough_circle (image, radius) 
Perform a circular Hough transform. 
skimage.transform.hough_ellipse (img[, ...]) 
Perform an elliptical Hough transform. 
skimage.transform.hough_line (img[, theta]) 
Perform a straight line Hough transform. 
skimage.transform.hough_line_peaks (hspace, ...) 
Return peaks in Hough transform. 
skimage.transform.ifrt2 (a) 
Compute the 2dimensional inverse finite radon transform (iFRT) for an (n+1) x n integer array. 
skimage.transform.integral_image (img) 
Integral image / summed area table. 
skimage.transform.integrate (ii, start, end, ...) 
Use an integral image to integrate over a given window. 
skimage.transform.iradon (radon_image[, ...]) 
Inverse radon transform. 
skimage.transform.iradon_sart (radon_image[, ...]) 
Inverse radon transform 
skimage.transform.matrix_transform (coords, ...) 
Apply 2D matrix transform. 
skimage.transform.order_angles_golden_ratio (theta) 
Order angles to reduce the amount of correlated information in subsequent projections. 
skimage.transform.probabilistic_hough_line (img) 
Return lines from a progressive probabilistic line Hough transform. 
skimage.transform.pyramid_expand (image[, ...]) 
Upsample and then smooth image. 
skimage.transform.pyramid_gaussian (image[, ...]) 
Yield images of the Gaussian pyramid formed by the input image. 
skimage.transform.pyramid_laplacian (image[, ...]) 
Yield images of the laplacian pyramid formed by the input image. 
skimage.transform.pyramid_reduce (image[, ...]) 
Smooth and then downsample image. 
skimage.transform.radon (image[, theta, circle]) 
Calculates the radon transform of an image given specified projection angles. 
skimage.transform.rescale (image, scale[, ...]) 
Scale image by a certain factor. 
skimage.transform.resize (image, output_shape) 
Resize image to match a certain size. 
skimage.transform.rotate (image, angle[, ...]) 
Rotate image by a certain angle around its center. 
skimage.transform.seam_carve (img, ...[, ...]) 
Carve vertical or horizontal seams off an image. 
skimage.transform.swirl (image[, center, ...]) 
Perform a swirl transformation. 
skimage.transform.warp (image, inverse_map[, ...]) 
Warp an image according to a given coordinate transformation. 
skimage.transform.warp_coords (coord_map, shape) 
Build the source coordinates for the output of a 2D image warp. 
skimage.transform.AffineTransform ([matrix, ...]) 
2D affine transformation of the form: 
skimage.transform.EuclideanTransform ([...]) 
2D Euclidean transformation of the form: 
skimage.transform.PiecewiseAffineTransform () 
2D piecewise affine transformation. 
skimage.transform.PolynomialTransform ([params]) 
2D polynomial transformation of the form: 
skimage.transform.ProjectiveTransform ([matrix]) 
Matrix transformation. 
skimage.transform.SimilarityTransform ([...]) 
2D similarity transformation of the form: 
skimage.transform.
downscale_local_mean
(image, factors, cval=0, clip=True)[source]¶Downsample Ndimensional image by local averaging.
The image is padded with cval if it is not perfectly divisible by the integer factors.
In contrast to the 2D interpolation in skimage.transform.resize and skimage.transform.rescale this function may be applied to Ndimensional images and calculates the local mean of elements in each block of size factors in the input image.
Parameters:  image : ndarray
factors : array_like
cval : float, optional


Returns:  image : ndarray

Examples
>>> a = np.arange(15).reshape(3, 5)
>>> a
array([[ 0, 1, 2, 3, 4],
[ 5, 6, 7, 8, 9],
[10, 11, 12, 13, 14]])
>>> downscale_local_mean(a, (2, 3))
array([[ 3.5, 4. ],
[ 5.5, 4.5]])
skimage.transform.
estimate_transform
(ttype, src, dst, **kwargs)[source]¶Estimate 2D geometric transformation parameters.
You can determine the over, well and underdetermined parameters with the total leastsquares method.
Number of source and destination coordinates must match.
Parameters:  ttype : {‘euclidean’, similarity’, ‘affine’, ‘piecewiseaffine’, ‘projective’, ‘polynomial’}
kwargs : array or int


Returns:  tform :

Examples
>>> import numpy as np
>>> from skimage import transform as tf
>>> # estimate transformation parameters
>>> src = np.array([0, 0, 10, 10]).reshape((2, 2))
>>> dst = np.array([12, 14, 1, 20]).reshape((2, 2))
>>> tform = tf.estimate_transform('similarity', src, dst)
>>> np.allclose(tform.inverse(tform(src)), src)
True
>>> # warp image using the estimated transformation
>>> from skimage import data
>>> image = data.camera()
>>> warp(image, inverse_map=tform.inverse)
>>> # create transformation with explicit parameters
>>> tform2 = tf.SimilarityTransform(scale=1.1, rotation=1,
... translation=(10, 20))
>>> # unite transformations, applied in order from left to right
>>> tform3 = tform + tform2
>>> np.allclose(tform3(src), tform2(tform(src)))
True
skimage.transform.
frt2
(a)[source]¶Compute the 2dimensional finite radon transform (FRT) for an n x n integer array.
Parameters:  a : array_like


Returns:  FRT : 2D ndarray

See also
ifrt2
Notes
The FRT has a unique inverse if and only if n is prime. [FRT] The idea for this algorithm is due to Vlad Negnevitski.
References
[FRT]  A. Kingston and I. Svalbe, “Projective transforms on periodic discrete image arrays,” in P. Hawkes (Ed), Advances in Imaging and Electron Physics, 139 (2006) 
Examples
Generate a test image: Use a prime number for the array dimensions
>>> SIZE = 59
>>> img = np.tri(SIZE, dtype=np.int32)
Apply the Finite Radon Transform:
>>> f = frt2(img)
skimage.transform.
hough_circle
(image, radius, normalize=True, full_output=False)[source]¶Perform a circular Hough transform.
Parameters:  image : (M, N) ndarray
radius : scalar or ndarray
normalize : boolean, optional (default True)
full_output : boolean, optional (default False)


Returns:  H : 3D ndarray (radius index, (M + 2R, N + 2R) ndarray)

skimage.transform.
hough_ellipse
(img, threshold=4, accuracy=1, min_size=4, max_size=None)[source]¶Perform an elliptical Hough transform.
Parameters:  img : (M, N) ndarray
threshold: int, optional
accuracy : double, optional
min_size : int, optional
max_size : int, optional


Returns:  result : ndarray with fields [(accumulator, y0, x0, a, b, orientation)]

Notes
The accuracy must be chosen to produce a peak in the accumulator distribution. In other words, a flat accumulator distribution with low values may be caused by a too low bin size.
References
[R415]  Xie, Yonghong, and Qiang Ji. “A new efficient ellipse detection method.” Pattern Recognition, 2002. Proceedings. 16th International Conference on. Vol. 2. IEEE, 2002 
Examples
>>> from skimage.draw import ellipse_perimeter
>>> img = np.zeros((25, 25), dtype=np.uint8)
>>> rr, cc = ellipse_perimeter(10, 10, 6, 8)
>>> img[cc, rr] = 1
>>> result = hough_ellipse(img, threshold=8)
>>> result.tolist()
[(10, 10.0, 10.0, 8.0, 6.0, 0.0)]
skimage.transform.
hough_line
(img, theta=None)[source]¶Perform a straight line Hough transform.
Parameters:  img : (M, N) ndarray
theta : 1D ndarray of double, optional


Returns:  H : 2D ndarray of uint64
theta : ndarray
distances : ndarray

Notes
The origin is the top left corner of the original image. X and Y axis are horizontal and vertical edges respectively. The distance is the minimal algebraic distance from the origin to the detected line.
Examples
Generate a test image:
>>> img = np.zeros((100, 150), dtype=bool)
>>> img[30, :] = 1
>>> img[:, 65] = 1
>>> img[35:45, 35:50] = 1
>>> for i in range(90):
... img[i, i] = 1
>>> img += np.random.random(img.shape) > 0.95
Apply the Hough transform:
>>> out, angles, d = hough_line(img)
import numpy as np
import matplotlib.pyplot as plt
from skimage.transform import hough_line
from skimage.draw import line
img = np.zeros((100, 150), dtype=bool)
img[30, :] = 1
img[:, 65] = 1
img[35:45, 35:50] = 1
rr, cc = line(60, 130, 80, 10)
img[rr, cc] = 1
img += np.random.random(img.shape) > 0.95
out, angles, d = hough_line(img)
fix, axes = plt.subplots(1, 2, figsize=(7, 4))
axes[0].imshow(img, cmap=plt.cm.gray)
axes[0].set_title('Input image')
axes[1].imshow(
out, cmap=plt.cm.bone,
extent=(np.rad2deg(angles[1]), np.rad2deg(angles[0]), d[1], d[0]))
axes[1].set_title('Hough transform')
axes[1].set_xlabel('Angle (degree)')
axes[1].set_ylabel('Distance (pixel)')
plt.tight_layout()
plt.show()
(Source code, png, pdf)
skimage.transform.
hough_line_peaks
(hspace, angles, dists, min_distance=9, min_angle=10, threshold=None, num_peaks=inf)[source]¶Return peaks in Hough transform.
Identifies most prominent lines separated by a certain angle and distance in a hough transform. Nonmaximum suppression with different sizes is applied separately in the first (distances) and second (angles) dimension of the hough space to identify peaks.
Parameters:  hspace : (N, M) array
angles : (M,) array
dists : (N, ) array
min_distance : int
min_angle : int
threshold : float
num_peaks : int


Returns:  hspace, angles, dists : tuple of array

Examples
>>> from skimage.transform import hough_line, hough_line_peaks
>>> from skimage.draw import line
>>> img = np.zeros((15, 15), dtype=np.bool_)
>>> rr, cc = line(0, 0, 14, 14)
>>> img[rr, cc] = 1
>>> rr, cc = line(0, 14, 14, 0)
>>> img[cc, rr] = 1
>>> hspace, angles, dists = hough_line(img)
>>> hspace, angles, dists = hough_line_peaks(hspace, angles, dists)
>>> len(angles)
2
skimage.transform.
ifrt2
(a)[source]¶Compute the 2dimensional inverse finite radon transform (iFRT) for an (n+1) x n integer array.
Parameters:  a : array_like


Returns:  iFRT : 2D n x n ndarray

See also
frt2
Notes
The FRT has a unique inverse if and only if n is prime. See [R416] for an overview. The idea for this algorithm is due to Vlad Negnevitski.
References
[R416]  (1, 2) A. Kingston and I. Svalbe, “Projective transforms on periodic discrete image arrays,” in P. Hawkes (Ed), Advances in Imaging and Electron Physics, 139 (2006) 
Examples
>>> SIZE = 59
>>> img = np.tri(SIZE, dtype=np.int32)
Apply the Finite Radon Transform:
>>> f = frt2(img)
Apply the Inverse Finite Radon Transform to recover the input
>>> fi = ifrt2(f)
Check that it’s identical to the original
>>> assert len(np.nonzero(imgfi)[0]) == 0
skimage.transform.
integral_image
(img)[source]¶Integral image / summed area table.
The integral image contains the sum of all elements above and to the left of it, i.e.:
Parameters:  img : ndarray


Returns:  S : ndarray

References
[R417]  F.C. Crow, “Summedarea tables for texture mapping,” ACM SIGGRAPH Computer Graphics, vol. 18, 1984, pp. 207212. 
skimage.transform.
integrate
(ii, start, end, *args)[source]¶Use an integral image to integrate over a given window.
Parameters:  ii : ndarray
start : List of tuples, each tuple of length equal to dimension of ii
end : List of tuples, each tuple of length equal to dimension of ii
args: optional


Returns:  S : scalar or ndarray

Examples
>>> arr = np.ones((5, 6), dtype=np.float)
>>> ii = integral_image(arr)
>>> integrate(ii, (1, 0), (1, 2)) # sum from (1, 0) to (1, 2)
array([ 3.])
>>> integrate(ii, [(3, 3)], [(4, 5)]) # sum from (3, 3) to (4, 5)
array([ 6.])
>>> # sum from (1, 0) to (1, 2) and from (3, 3) to (4, 5)
>>> integrate(ii, [(1, 0), (3, 3)], [(1, 2), (4, 5)])
array([ 3., 6.])
skimage.transform.
iradon
(radon_image, theta=None, output_size=None, filter='ramp', interpolation='linear', circle=None)[source]¶Inverse radon transform.
Reconstruct an image from the radon transform, using the filtered back projection algorithm.
Parameters:  radon_image : array_like, dtype=float
theta : array_like, dtype=float, optional
output_size : int
filter : str, optional (default ramp)
interpolation : str, optional (default ‘linear’)
circle : boolean, optional


Returns:  reconstructed : ndarray

Notes
It applies the Fourier slice theorem to reconstruct an image by multiplying the frequency domain of the filter with the FFT of the projection data. This algorithm is called filtered back projection.
References
[R418]  AC Kak, M Slaney, “Principles of Computerized Tomographic Imaging”, IEEE Press 1988. 
[R419]  B.R. Ramesh, N. Srinivasa, K. Rajgopal, “An Algorithm for Computing the Discrete Radon Transform With Some Applications”, Proceedings of the Fourth IEEE Region 10 International Conference, TENCON ‘89, 1989 
skimage.transform.
iradon_sart
(radon_image, theta=None, image=None, projection_shifts=None, clip=None, relaxation=0.15)[source]¶Inverse radon transform
Reconstruct an image from the radon transform, using a single iteration of the Simultaneous Algebraic Reconstruction Technique (SART) algorithm.
Parameters:  radon_image : 2D array, dtype=float
theta : 1D array, dtype=float, optional
image : 2D array, dtype=float, optional
projection_shifts : 1D array, dtype=float
clip : length2 sequence of floats
relaxation : float


Returns:  reconstructed : ndarray

Notes
Algebraic Reconstruction Techniques are based on formulating the tomography reconstruction problem as a set of linear equations. Along each ray, the projected value is the sum of all the values of the cross section along the ray. A typical feature of SART (and a few other variants of algebraic techniques) is that it samples the cross section at equidistant points along the ray, using linear interpolation between the pixel values of the cross section. The resulting set of linear equations are then solved using a slightly modified Kaczmarz method.
When using SART, a single iteration is usually sufficient to obtain a good reconstruction. Further iterations will tend to enhance highfrequency information, but will also often increase the noise.
References
[R420]  AC Kak, M Slaney, “Principles of Computerized Tomographic Imaging”, IEEE Press 1988. 
[R421]  AH Andersen, AC Kak, “Simultaneous algebraic reconstruction technique (SART): a superior implementation of the ART algorithm”, Ultrasonic Imaging 6 pp 81–94 (1984) 
[R422]  S Kaczmarz, “Angenäherte auflösung von systemen linearer gleichungen”, Bulletin International de l’Academie Polonaise des Sciences et des Lettres 35 pp 355–357 (1937) 
[R423]  Kohler, T. “A projection access scheme for iterative reconstruction based on the golden section.” Nuclear Science Symposium Conference Record, 2004 IEEE. Vol. 6. IEEE, 2004. 
[R424]  Kaczmarz’ method, Wikipedia, http://en.wikipedia.org/wiki/Kaczmarz_method 
skimage.transform.
order_angles_golden_ratio
(theta)[source]¶Order angles to reduce the amount of correlated information in subsequent projections.
Parameters:  theta : 1D array of floats


Returns:  indices_generator : generator yielding unsigned integers

Notes
The method used here is that of the golden ratio introduced by T. Kohler.
References
[R425]  Kohler, T. “A projection access scheme for iterative reconstruction based on the golden section.” Nuclear Science Symposium Conference Record, 2004 IEEE. Vol. 6. IEEE, 2004. 
[R426]  Winkelmann, Stefanie, et al. “An optimal radial profile order based on the Golden Ratio for timeresolved MRI.” Medical Imaging, IEEE Transactions on 26.1 (2007): 6876. 
skimage.transform.
probabilistic_hough_line
(img, threshold=10, line_length=50, line_gap=10, theta=None)[source]¶Return lines from a progressive probabilistic line Hough transform.
Parameters:  img : (M, N) ndarray
threshold : int, optional
line_length : int, optional
line_gap : int, optional
theta : 1D ndarray, dtype=double, optional


Returns:  lines : list

References
[R427]  C. Galamhos, J. Matas and J. Kittler, “Progressive probabilistic Hough transform for line detection”, in IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 1999. 
skimage.transform.
pyramid_expand
(image, upscale=2, sigma=None, order=1, mode='reflect', cval=0)[source]¶Upsample and then smooth image.
Parameters:  image : array
upscale : float, optional
sigma : float, optional
order : int, optional
mode : {‘reflect’, ‘constant’, ‘edge’, ‘symmetric’, ‘wrap’}, optional
cval : float, optional


Returns:  out : array

References
[R428]  http://web.mit.edu/persci/people/adelson/pub_pdfs/pyramid83.pdf 
skimage.transform.
pyramid_gaussian
(image, max_layer=1, downscale=2, sigma=None, order=1, mode='reflect', cval=0)[source]¶Yield images of the Gaussian pyramid formed by the input image.
Recursively applies the pyramid_reduce function to the image, and yields the downscaled images.
Note that the first image of the pyramid will be the original, unscaled image. The total number of images is max_layer + 1. In case all layers are computed, the last image is either a onepixel image or the image where the reduction does not change its shape.
Parameters:  image : array
max_layer : int
downscale : float, optional
sigma : float, optional
order : int, optional
mode : {‘reflect’, ‘constant’, ‘edge’, ‘symmetric’, ‘wrap’}, optional
cval : float, optional


Returns:  pyramid : generator

References
[R429]  http://web.mit.edu/persci/people/adelson/pub_pdfs/pyramid83.pdf 
skimage.transform.
pyramid_laplacian
(image, max_layer=1, downscale=2, sigma=None, order=1, mode='reflect', cval=0)[source]¶Yield images of the laplacian pyramid formed by the input image.
Each layer contains the difference between the downsampled and the downsampled, smoothed image:
layer = resize(prev_layer)  smooth(resize(prev_layer))
Note that the first image of the pyramid will be the difference between the original, unscaled image and its smoothed version. The total number of images is max_layer + 1. In case all layers are computed, the last image is either a onepixel image or the image where the reduction does not change its shape.
Parameters:  image : array
max_layer : int
downscale : float, optional
sigma : float, optional
order : int, optional
mode : {‘reflect’, ‘constant’, ‘edge’, ‘symmetric’, ‘wrap’}, optional
cval : float, optional


Returns:  pyramid : generator

References
[R430]  http://web.mit.edu/persci/people/adelson/pub_pdfs/pyramid83.pdf 
[R431]  http://sepwww.stanford.edu/data/media/public/sep/morgan/texturematch/paper_html/node3.html 
skimage.transform.
pyramid_reduce
(image, downscale=2, sigma=None, order=1, mode='reflect', cval=0)[source]¶Smooth and then downsample image.
Parameters:  image : array
downscale : float, optional
sigma : float, optional
order : int, optional
mode : {‘reflect’, ‘constant’, ‘edge’, ‘symmetric’, ‘wrap’}, optional
cval : float, optional


Returns:  out : array

References
[R432]  http://web.mit.edu/persci/people/adelson/pub_pdfs/pyramid83.pdf 
skimage.transform.
radon
(image, theta=None, circle=None)[source]¶Calculates the radon transform of an image given specified projection angles.
Parameters:  image : array_like, dtype=float
theta : array_like, dtype=float, optional (default np.arange(180))
circle : boolean, optional


Returns:  radon_image : ndarray

Notes
Based on code of Justin K. Romberg (http://www.clear.rice.edu/elec431/projects96/DSP/bpanalysis.html)
References
[R433]  AC Kak, M Slaney, “Principles of Computerized Tomographic Imaging”, IEEE Press 1988. 
[R434]  B.R. Ramesh, N. Srinivasa, K. Rajgopal, “An Algorithm for Computing the Discrete Radon Transform With Some Applications”, Proceedings of the Fourth IEEE Region 10 International Conference, TENCON ‘89, 1989 
skimage.transform.
rescale
(image, scale, order=1, mode='constant', cval=0, clip=True, preserve_range=False)[source]¶Scale image by a certain factor.
Performs interpolation to upscale or downscale images. For downsampling Ndimensional images with integer factors by applying the arithmetic sum or mean, see skimage.measure.local_sum and skimage.transform.downscale_local_mean, respectively.
Parameters:  image : ndarray
scale : {float, tuple of floats}


Returns:  scaled : ndarray

Other Parameters:  
order : int, optional
mode : {‘constant’, ‘edge’, ‘symmetric’, ‘reflect’, ‘wrap’}, optional
cval : float, optional
clip : bool, optional
preserve_range : bool, optional

Examples
>>> from skimage import data
>>> from skimage.transform import rescale
>>> image = data.camera()
>>> rescale(image, 0.1).shape
(51, 51)
>>> rescale(image, 0.5).shape
(256, 256)
skimage.transform.
resize
(image, output_shape, order=1, mode='constant', cval=0, clip=True, preserve_range=False)[source]¶Resize image to match a certain size.
Performs interpolation to upsize or downsize images. For downsampling Ndimensional images by applying the arithmetic sum or mean, see skimage.measure.local_sum and skimage.transform.downscale_local_mean, respectively.
Parameters:  image : ndarray
output_shape : tuple or ndarray


Returns:  resized : ndarray

Other Parameters:  
order : int, optional
mode : {‘constant’, ‘edge’, ‘symmetric’, ‘reflect’, ‘wrap’}, optional
cval : float, optional
clip : bool, optional
preserve_range : bool, optional

Notes
Modes ‘reflect’ and ‘symmetric’ are similar, but differ in whether the edge pixels are duplicated during the reflection. As an example, if an array has values [0, 1, 2] and was padded to the right by four values using symmetric, the result would be [0, 1, 2, 2, 1, 0, 0], while for reflect it would be [0, 1, 2, 1, 0, 1, 2].
Examples
>>> from skimage import data
>>> from skimage.transform import resize
>>> image = data.camera()
>>> resize(image, (100, 100)).shape
(100, 100)
skimage.transform.
rotate
(image, angle, resize=False, center=None, order=1, mode='constant', cval=0, clip=True, preserve_range=False)[source]¶Rotate image by a certain angle around its center.
Parameters:  image : ndarray
angle : float
resize : bool, optional
center : iterable of length 2


Returns:  rotated : ndarray

Other Parameters:  
order : int, optional
mode : {‘constant’, ‘edge’, ‘symmetric’, ‘reflect’, ‘wrap’}, optional
cval : float, optional
clip : bool, optional
preserve_range : bool, optional

Examples
>>> from skimage import data
>>> from skimage.transform import rotate
>>> image = data.camera()
>>> rotate(image, 2).shape
(512, 512)
>>> rotate(image, 2, resize=True).shape
(530, 530)
>>> rotate(image, 90, resize=True).shape
(512, 512)
skimage.transform.
seam_carve
(img, energy_map, mode, num, border=1, force_copy=True)[source]¶Carve vertical or horizontal seams off an image.
Carves out vertical/horizontal seams from an image while using the given energy map to decide the importance of each pixel.
Parameters:  image : (M, N) or (M, N, 3) ndarray
energy_map : (M, N) ndarray
mode : str {‘horizontal’, ‘vertical’}
num : int
border : int, optional
force_copy : bool, optional


Returns:  out : ndarray

References
[R435]  Shai Avidan and Ariel Shamir “Seam Carving for ContentAware Image Resizing” http://www.cs.jhu.edu/~misha/ReadingSeminar/Papers/Avidan07.pdf 
skimage.transform.
swirl
(image, center=None, strength=1, radius=100, rotation=0, output_shape=None, order=1, mode=None, cval=0, clip=True, preserve_range=False)[source]¶Perform a swirl transformation.
Parameters:  image : ndarray
center : (row, column) tuple or (2,) ndarray, optional
strength : float, optional
radius : float, optional
rotation : float, optional


Returns:  swirled : ndarray

Other Parameters:  
output_shape : tuple (rows, cols), optional
order : int, optional
mode : {‘constant’, ‘edge’, ‘symmetric’, ‘reflect’, ‘wrap’}, optional
cval : float, optional
clip : bool, optional
preserve_range : bool, optional

skimage.transform.
warp
(image, inverse_map, map_args={}, output_shape=None, order=1, mode='constant', cval=0.0, clip=True, preserve_range=False)[source]¶Warp an image according to a given coordinate transformation.
Parameters:  image : ndarray
inverse_map : transformation object, callable
map_args : dict, optional
output_shape : tuple (rows, cols), optional
order : int, optional
mode : {‘constant’, ‘edge’, ‘symmetric’, ‘reflect’, ‘wrap’}, optional
cval : float, optional
clip : bool, optional
preserve_range : bool, optional


Returns:  warped : double ndarray

Notes
Examples
>>> from skimage.transform import warp
>>> from skimage import data
>>> image = data.camera()
The following image warps are all equal but differ substantially in execution time. The image is shifted to the bottom.
Use a geometric transform to warp an image (fast):
>>> from skimage.transform import SimilarityTransform
>>> tform = SimilarityTransform(translation=(0, 10))
>>> warped = warp(image, tform)
Use a callable (slow):
>>> def shift_down(xy):
... xy[:, 1] = 10
... return xy
>>> warped = warp(image, shift_down)
Use a transformation matrix to warp an image (fast):
>>> matrix = np.array([[1, 0, 0], [0, 1, 10], [0, 0, 1]])
>>> warped = warp(image, matrix)
>>> from skimage.transform import ProjectiveTransform
>>> warped = warp(image, ProjectiveTransform(matrix=matrix))
You can also use the inverse of a geometric transformation (fast):
>>> warped = warp(image, tform.inverse)
For ND images you can pass a coordinate array, that specifies the coordinates in the input image for every element in the output image. E.g. if you want to rescale a 3D cube, you can do:
>>> cube_shape = np.array([30, 30, 30])
>>> cube = np.random.rand(*cube_shape)
Setup the coordinate array, that defines the scaling:
>>> scale = 0.1
>>> output_shape = (scale * cube_shape).astype(int)
>>> coords0, coords1, coords2 = np.mgrid[:output_shape[0],
... :output_shape[1], :output_shape[2]]
>>> coords = np.array([coords0, coords1, coords2])
Assume that the cube contains spatial data, where the first array element center is at coordinate (0.5, 0.5, 0.5) in real space, i.e. we have to account for this extra offset when scaling the image:
>>> coords = (coords + 0.5) / scale  0.5
>>> warped = warp(cube, coords)
skimage.transform.
warp_coords
(coord_map, shape, dtype=<class 'numpy.float64'>)[source]¶Build the source coordinates for the output of a 2D image warp.
Parameters:  coord_map : callable like GeometricTransform.inverse
shape : tuple
dtype : np.dtype or string


Returns:  coords : (ndim, rows, cols[, bands]) array of dtype dtype

Notes
This is a lowerlevel routine that produces the source coordinates for 2D images used by warp().
It is provided separately from warp to give additional flexibility to users who would like, for example, to reuse a particular coordinate mapping, to use specific dtypes at various points along the the imagewarping process, or to implement different postprocessing logic than warp performs after the call to ndi.map_coordinates.
Examples
Produce a coordinate map that shifts an image up and to the right:
>>> from skimage import data
>>> from scipy.ndimage import map_coordinates
>>>
>>> def shift_up10_left20(xy):
... return xy  np.array([20, 10])[None, :]
>>>
>>> image = data.astronaut().astype(np.float32)
>>> coords = warp_coords(shift_up10_left20, image.shape)
>>> warped_image = map_coordinates(image, coords)
AffineTransform
¶skimage.transform.
AffineTransform
(matrix=None, scale=None, rotation=None, shear=None, translation=None)[source]¶Bases: skimage.transform._geometric.ProjectiveTransform
2D affine transformation of the form:
 X = a0*x + a1*y + a2 =
 = sx*x*cos(rotation)  sy*y*sin(rotation + shear) + a2
 Y = b0*x + b1*y + b2 =
 = sx*x*sin(rotation) + sy*y*cos(rotation + shear) + b2
where sx
and sy
are scale factors in the x and y directions,
and the homogeneous transformation matrix is:
[[a0 a1 a2]
[b0 b1 b2]
[0 0 1]]
Parameters:  matrix : (3, 3) array, optional
scale : (sx, sy) as array, list or tuple, optional
rotation : float, optional
shear : float, optional
translation : (tx, ty) as array, list or tuple, optional


Attributes
params  ((3, 3) array) Homogeneous transformation matrix. 
rotation
¶scale
¶shear
¶translation
¶EuclideanTransform
¶skimage.transform.
EuclideanTransform
(matrix=None, rotation=None, translation=None)[source]¶Bases: skimage.transform._geometric.ProjectiveTransform
2D Euclidean transformation of the form:
 X = a0 * x  b0 * y + a1 =
 = x * cos(rotation)  y * sin(rotation) + a1
 Y = b0 * x + a0 * y + b1 =
 = x * sin(rotation) + y * cos(rotation) + b1
where the homogeneous transformation matrix is:
[[a0 b0 a1]
[b0 a0 b1]
[0 0 1]]
The Euclidean transformation is a rigid transformation with rotation and translation parameters. The similarity transformation extends the Euclidean transformation with a single scaling factor.
Parameters:  matrix : (3, 3) array, optional
rotation : float, optional
translation : (tx, ty) as array, list or tuple, optional


Attributes
params  ((3, 3) array) Homogeneous transformation matrix. 
estimate
(src, dst)[source]¶Estimate the transformation from a set of corresponding points.
You can determine the over, well and underdetermined parameters with the total leastsquares method.
Number of source and destination coordinates must match.
Parameters:  src : (N, 2) array
dst : (N, 2) array


Returns:  success : bool

rotation
¶translation
¶PiecewiseAffineTransform
¶skimage.transform.
PiecewiseAffineTransform
[source]¶Bases: skimage.transform._geometric.GeometricTransform
2D piecewise affine transformation.
Control points are used to define the mapping. The transform is based on a Delaunay triangulation of the points to form a mesh. Each triangle is used to find a local affine transform.
Attributes
affines  (list of AffineTransform objects) Affine transformations for each triangle in the mesh. 
inverse_affines  (list of AffineTransform objects) Inverse affine transformations for each triangle in the mesh. 
estimate
(src, dst)[source]¶Estimate the transformation from a set of corresponding points.
Number of source and destination coordinates must match.
Parameters:  src : (N, 2) array
dst : (N, 2) array


Returns:  success : bool

PolynomialTransform
¶skimage.transform.
PolynomialTransform
(params=None)[source]¶Bases: skimage.transform._geometric.GeometricTransform
2D polynomial transformation of the form:
X = sum[j=0:order]( sum[i=0:j]( a_ji * x**(j  i) * y**i )) Y = sum[j=0:order]( sum[i=0:j]( b_ji * x**(j  i) * y**i ))
Parameters:  params : (2, N) array, optional


Attributes
params  ((2, N) array) Polynomial coefficients where N * 2 = (order + 1) * (order + 2). So, a_ji is defined in params[0, :] and b_ji in params[1, :]. 
estimate
(src, dst, order=2)[source]¶Estimate the transformation from a set of corresponding points.
You can determine the over, well and underdetermined parameters with the total leastsquares method.
Number of source and destination coordinates must match.
The transformation is defined as:
X = sum[j=0:order]( sum[i=0:j]( a_ji * x**(j  i) * y**i ))
Y = sum[j=0:order]( sum[i=0:j]( b_ji * x**(j  i) * y**i ))
These equations can be transformed to the following form:
0 = sum[j=0:order]( sum[i=0:j]( a_ji * x**(j  i) * y**i ))  X
0 = sum[j=0:order]( sum[i=0:j]( b_ji * x**(j  i) * y**i ))  Y
which exist for each set of corresponding points, so we have a set of N * 2 equations. The coefficients appear linearly so we can write A x = 0, where:
A = [[1 x y x**2 x*y y**2 ... 0 ... 0 X]
[0 ... 0 1 x y x**2 x*y y**2 Y]
...
...
]
x.T = [a00 a10 a11 a20 a21 a22 ... ann
b00 b10 b11 b20 b21 b22 ... bnn c3]
In case of total leastsquares the solution of this homogeneous system of equations is the right singular vector of A which corresponds to the smallest singular value normed by the coefficient c3.
Parameters:  src : (N, 2) array
dst : (N, 2) array
order : int, optional


Returns:  success : bool

ProjectiveTransform
¶skimage.transform.
ProjectiveTransform
(matrix=None)[source]¶Bases: skimage.transform._geometric.GeometricTransform
Matrix transformation.
Apply a projective transformation (homography) on coordinates.
For each homogeneous coordinate , its target position is calculated by multiplying with the given matrix, , to give :
[[a0 a1 a2]
[b0 b1 b2]
[c0 c1 1 ]].
E.g., to rotate by theta degrees clockwise, the matrix should be:
[[cos(theta) sin(theta) 0]
[sin(theta) cos(theta) 0]
[0 0 1]]
or, to translate x by 10 and y by 20:
[[1 0 10]
[0 1 20]
[0 0 1 ]].
Parameters:  matrix : (3, 3) array, optional


Attributes
params  ((3, 3) array) Homogeneous transformation matrix. 
estimate
(src, dst)[source]¶Estimate the transformation from a set of corresponding points.
You can determine the over, well and underdetermined parameters with the total leastsquares method.
Number of source and destination coordinates must match.
The transformation is defined as:
X = (a0*x + a1*y + a2) / (c0*x + c1*y + 1)
Y = (b0*x + b1*y + b2) / (c0*x + c1*y + 1)
These equations can be transformed to the following form:
0 = a0*x + a1*y + a2  c0*x*X  c1*y*X  X
0 = b0*x + b1*y + b2  c0*x*Y  c1*y*Y  Y
which exist for each set of corresponding points, so we have a set of N * 2 equations. The coefficients appear linearly so we can write A x = 0, where:
A = [[x y 1 0 0 0 x*X y*X X]
[0 0 0 x y 1 x*Y y*Y Y]
...
...
]
x.T = [a0 a1 a2 b0 b1 b2 c0 c1 c3]
In case of total leastsquares the solution of this homogeneous system of equations is the right singular vector of A which corresponds to the smallest singular value normed by the coefficient c3.
In case of the affine transformation the coefficients c0 and c1 are 0. Thus the system of equations is:
A = [[x y 1 0 0 0 X]
[0 0 0 x y 1 Y]
...
...
]
x.T = [a0 a1 a2 b0 b1 b2 c3]
Parameters:  src : (N, 2) array
dst : (N, 2) array


Returns:  success : bool

SimilarityTransform
¶skimage.transform.
SimilarityTransform
(matrix=None, scale=None, rotation=None, translation=None)[source]¶Bases: skimage.transform._geometric.EuclideanTransform
2D similarity transformation of the form:
 X = a0 * x  b0 * y + a1 =
 = s * x * cos(rotation)  s * y * sin(rotation) + a1
 Y = b0 * x + a0 * y + b1 =
 = s * x * sin(rotation) + s * y * cos(rotation) + b1
where s
is a scale factor and the homogeneous transformation matrix is:
[[a0 b0 a1]
[b0 a0 b1]
[0 0 1]]
The similarity transformation extends the Euclidean transformation with a single scaling factor in addition to the rotation and translation parameters.
Parameters:  matrix : (3, 3) array, optional
scale : float, optional
rotation : float, optional
translation : (tx, ty) as array, list or tuple, optional


Attributes
params  ((3, 3) array) Homogeneous transformation matrix. 
estimate
(src, dst)[source]¶Estimate the transformation from a set of corresponding points.
You can determine the over, well and underdetermined parameters with the total leastsquares method.
Number of source and destination coordinates must match.
Parameters:  src : (N, 2) array
dst : (N, 2) array


Returns:  success : bool

scale
¶